()  ()  ()  ()  ()  ()  ()  ()  ()  () DESeq2 () GO (1) GO-MWU (7) IDs (1) Jupyter (4) Kallisto (4) Trinity () Ubuntu (5) WGCNA (2) background (1) cbai_transcriptomev2.0 () cbai_transcriptomev4.0 () deseq2 () design () hemat_transcriptomev1.6 () hematodinium (7) hematodinium (7) in (1) interview (1) kallisto () notes (3) overview () planning (1) project (1) taxa (2) vitro (1)

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 DESeq2 ()

 GO (1)

GO terms and Venn Diagrams

 GO-MWU (7)

Using C. bairdi transcriptome v4.0
Ditching full genomes, using hematodinium transcriptomev1.6
GO-MWU Wrapup + Future Plans
Completed GO-MWU for new analyses
Back to Square One?
Starting GO-MWU
Workflow Standardization

 IDs (1)

GO terms and Venn Diagrams

 Jupyter (4)

Orientation 2, This Time It's CoE-ier
Orientation!
Getting A Grep On Things
Probing Jupyter

 Kallisto (4)

Lists of Differentially-Expressed Genes (plus graphs)
Day 0 Ambient vs. Day 17 Ambient
Adding Individual Libraries
Starting Kallisto

 Trinity ()

 Ubuntu (5)

Orientation 2, This Time It's CoE-ier
Orientation!
Getting A Grep On Things
Probing Jupyter
He-Mat and the Masters of the Database

 WGCNA (2)

Figuring Out WGCNA, Part 2
Figuring Out WGCNA, Part 1

 background (1)

Background Info on Grace's Research

 cbai_transcriptomev2.0 ()

 cbai_transcriptomev4.0 ()

 deseq2 ()

 design ()

 hemat_transcriptomev1.6 ()

 hematodinium (7)

Reading Update and Research Plans
Background Info on Grace's Research
Orientation 2, This Time It's CoE-ier
Orientation!
Getting A Grep On Things
Probing Jupyter
He-Mat and the Masters of the Database

 hematodinium (7)

Reading Update and Research Plans
Background Info on Grace's Research
Orientation 2, This Time It's CoE-ier
Orientation!
Getting A Grep On Things
Probing Jupyter
He-Mat and the Masters of the Database

 in (1)

Project Proposal Idea

 interview (1)

Background Info on Grace's Research

 kallisto ()

 notes (3)

TRINITY Pipeline Update
Reading Update and Research Plans
Background Info on Grace's Research

 overview ()

 planning (1)

Reading Update and Research Plans

 project (1)

Project Proposal Idea

 taxa (2)

Using NCBI Genomes
Determining Taxa of DEGs

 vitro (1)

Project Proposal Idea